Title: Wavelength quality control — lambda_check • tidyDenovix

Title: Wavelength quality control

Usage

lambda_check(
  qdf,
  sample_type = c("RNA", "DNA"),
  check_level = c("strict", "lax")
)

Arguments

qdf: A data frame with quality attributes.
sample_type: The type of sample under investigation.
check_level: The level of strictness based on sample type.

Value

A data frame that meets the quality check criteria.

Note

Some key assumptions are made about quality for RNA or DNA. At the moment column names is the main issue found with using this approach.

Author

Tingwei Adeck

Examples

fpath <- system.file("extdata", "rnaspec2018.csv", package = "tidyDenovix", mustWork = TRUE)
rna_data = read_denovix_data(fpath, file_type = 'csv')
qc_check = lambda_check(rna_data,sample_type='RNA',check_level='lax')